CSBC Supported Publications

Publications

  • 2022 | Nanoscopic Spatial Association between Ras and Phosphatidylserine on the Cell Membrane Studied with Multicolor Super Resolution Microscopy. Koester, AM, Tao, K, Szczepaniak, M, Rames, MJ, Nan, X Biomolecules 12 (8): . doi: 10.3390/biom12081033. PubMed PMID:35892343 PubMed Central PMC9332490
  • 2022 | ECM dimensionality tunes actin tension to modulate endoplasmic reticulum function and spheroid phenotypes of mammary epithelial cells. Kai, F, Ou, G, Tourdot, RW, Stashko, C, Gaietta, G, Swift, MF, Volkmann, N, Long, AF, Han, Y, Huang, HH, Northey, JJ, Leidal, AM, Viasnoff, V, Bryant, DM, Guo, W, Wiita, AP, Guo, M, Dumont, S, Hanein, D, Radhakrishnan, R, Weaver, VM EMBO J : e109205. doi: 10.15252/embj.2021109205. PubMed PMID:35880301
  • 2022 | Drug independence and the curability of cancer by combination chemotherapy. Pomeroy, AE, Schmidt, EV, Sorger, PK, Palmer, AC Trends Cancer : . doi: 10.1016/j.trecan.2022.06.009. PubMed PMID:35842290
  • 2022 | ERK2 MAP kinase regulates SUFU binding by multisite phosphorylation of GLI1. Bardwell, AJ, Wu, B, Sarin, KY, Waterman, ML, Atwood, SX, Bardwell, L Life Sci Alliance 5 (11): . doi: 10.26508/lsa.202101353. PubMed PMID:35831023 PubMed Central PMC9279676
  • 2022 | Fides: Reliable trust-region optimization for parameter estimation of ordinary differential equation models. Fröhlich, F, Sorger, PK PLoS Comput Biol 18 (7): e1010322. doi: 10.1371/journal.pcbi.1010322. PubMed PMID:35830470 PubMed Central PMC9312381
  • 2022 | Dissecting the treatment-naive ecosystem of human melanoma brain metastasis. Biermann, J, Melms, JC, Amin, AD, Wang, Y, Caprio, LA, Karz, A, Tagore, S, Barrera, I, Ibarra-Arellano, MA, Andreatta, M, Fullerton, BT, Gretarsson, KH, Sahu, V, Mangipudy, VS, Nguyen, TTT, Nair, A, Rogava, M, Ho, P, Koch, PD, Banu, M, Humala, N, Mahajan, A, Walsh, ZH, Shah, SB, Vaccaro, DH, Caldwell, B, Mu, M, Wünnemann, F, Chazotte, M, Berhe, S, Luoma, AM, Driver, J, Ingham, M, Khan, SA, Rapisuwon, S, Slingluff, CL Jr, Eigentler, T, Röcken, M, Carvajal, R, Atkins, MB, Davies, MA, Agustinus, A, Bakhoum, SF, Azizi, E, Siegelin, M, Lu, C, Carmona, SJ, Hibshoosh, H, Ribas, A, Canoll, P, Bruce, JN, Bi, WL, Agrawal, P, Schapiro, D, Hernando, E, Macosko, EZ, Chen, F, Schwartz, GK, Izar, B Cell 185 (14): 2591-2608.e30. doi: 10.1016/j.cell.2022.06.007. PubMed PMID:35803246
  • 2022 | A multiplex implantable microdevice assay identifies synergistic combinations of cancer immunotherapies and conventional drugs. Tatarova, Z, Blumberg, DC, Korkola, JE, Heiser, LM, Muschler, JL, Schedin, PJ, Ahn, SW, Mills, GB, Coussens, LM, Jonas, O, Gray, JW Nat Biotechnol : . doi: 10.1038/s41587-022-01379-y. PubMed PMID:35788566
  • 2022 | A database of pediatric drug effects to evaluate ontogenic mechanisms from child growth and development. Giangreco, NP, Tatonetti, NP Med (N Y) : . doi: 10.1016/j.medj.2022.06.001. PubMed PMID:35752163
  • 2022 | Accurate Identification of Subclones in Tumor Genomes. Ahmadinejad, N, Troftgruben, S, Wang, J, Chandrashekar, PB, Dinu, V, Maley, C, Liu, L Mol Biol Evol 39 (7): . doi: 10.1093/molbev/msac136. PubMed PMID:35749590 PubMed Central PMC9260306
  • 2022 | Cancer cells depend on environmental lipids for proliferation when electron acceptors are limited. Li, Z, Ji, BW, Dixit, PD, Tchourine, K, Lien, EC, Hosios, AM, Abbott, KL, Rutter, JC, Westermark, AM, Gorodetsky, EF, Sullivan, LB, Vander Heiden, MG, Vitkup, D Nat Metab 4 (6): 711-723. doi: 10.1038/s42255-022-00588-8. PubMed PMID:35739397
  • 2022 | Integrating multi-omics data reveals function and therapeutic potential of deubiquitinating enzymes. Doherty, LM, Mills, CE, Boswell, SA, Liu, X, Hoyt, CT, Gyori, B, Buhrlage, SJ, Sorger, PK Elife 11 : . doi: 10.7554/eLife.72879. PubMed PMID:35737447 PubMed Central PMC9225015
  • 2022 | A scalable, open-source implementation of a large-scale mechanistic model for single cell proliferation and death signaling. Erdem, C, Mutsuddy, A, Bensman, EM, Dodd, WB, Saint-Antoine, MM, Bouhaddou, M, Blake, RC, Gross, SM, Heiser, LM, Feltus, FA, Birtwistle, MR Nat Commun 13 (1): 3555. doi: 10.1038/s41467-022-31138-1. PubMed PMID:35729113 PubMed Central PMC9213456
  • 2022 | Single-cell characterization of step-wise acquisition of carboplatin resistance in ovarian cancer. Wenzel, AT, Champa, D, Venkatesh, H, Sun, S, Tsai, CY, Mesirov, JP, Bui, JD, Howell, SB, Harismendy, O NPJ Syst Biol Appl 8 (1): 20. doi: 10.1038/s41540-022-00230-z. PubMed PMID:35715421 PubMed Central PMC9206019
  • 2022 | Single-cell profiling of the antigen-specific response to BNT162b2 SARS-CoV-2 RNA vaccine. Kramer, KJ, Wilfong, EM, Voss, K, Barone, SM, Shiakolas, AR, Raju, N, Roe, CE, Suryadevara, N, Walker, LM, Wall, SC, Paulo, A, Schaefer, S, Dahunsi, D, Westlake, CS, Crowe, JE Jr, Carnahan, RH, Rathmell, JC, Bonami, RH, Georgiev, IS, Irish, JM Nat Commun 13 (1): 3466. doi: 10.1038/s41467-022-31142-5. PubMed PMID:35710908 PubMed Central PMC9201272
  • 2022 | Systematically quantifying morphological features reveals constraints on organoid phenotypes. Beck, LE, Lee, J, Coté, C, Dunagin, MC, Lukonin, I, Salla, N, Chang, MK, Hughes, AJ, Mornin, JD, Gartner, ZJ, Liberali, P, Raj, A Cell Syst 13 (7): 547-560.e3. doi: 10.1016/j.cels.2022.05.008. PubMed PMID:35705097 PubMed Central PMC9350855
  • 2022 | Diet, Microbes, and Cancer Across the Tree of Life: a Systematic Review. Kapsetaki, SE, Marquez Alcaraz, G, Maley, CC, Whisner, CM, Aktipis, A Curr Nutr Rep : . doi: 10.1007/s13668-022-00420-5. PubMed PMID:35704266 PubMed Central PMC9197725
  • 2022 | Accurate Identification of Transcription Regulatory Sequences and Genes in Coronaviruses. Zhang, C, Sashittal, P, Xiang, M, Zhang, Y, Kazi, A, El-Kebir, M Mol Biol Evol 39 (7): . doi: 10.1093/molbev/msac133. PubMed PMID:35700225 PubMed Central PMC9214144
  • 2022 | Haploinsufficiency of a Circadian Clock Gene Bmal1 (Arntl or Mop3) Causes Brain-Wide mTOR Hyperactivation and Autism-like Behavioral Phenotypes in Mice. Singla, R, Mishra, A, Lin, H, Lorsung, E, Le, N, Tin, S, Jin, VX, Cao, R Int J Mol Sci 23 (11): . doi: 10.3390/ijms23116317. PubMed PMID:35682995 PubMed Central PMC9181331
  • 2022 | Dynamic nucleosome landscape elicits a noncanonical GATA2 pioneer model. Li, T, Liu, Q, Chen, Z, Fang, K, Huang, F, Fu, X, Wang, Q, Jin, VX Nat Commun 13 (1): 3145. doi: 10.1038/s41467-022-30960-x. PubMed PMID:35672415 PubMed Central PMC9174260
  • 2022 | ENDORSE: a prognostic model for endocrine therapy in estrogen-receptor-positive breast cancers. Nath, A, Cohen, AL, Bild, AH Mol Syst Biol 18 (6): e10558. doi: 10.15252/msb.202110558. PubMed PMID:35671075 PubMed Central PMC9172932
  • 2022 | Deciphering the Immune Complexity in Esophageal Adenocarcinoma and Pre-Cancerous Lesions With Sequential Multiplex Immunohistochemistry and Sparse Subspace Clustering Approach. Sundaram, S, Kim, EN, Jones, GM, Sivagnanam, S, Tripathi, M, Miremadi, A, Di Pietro, M, Coussens, LM, Fitzgerald, RC, Chang, YH, Zhuang, L Front Immunol 13 : 874255. doi: 10.3389/fimmu.2022.874255. PubMed PMID:35663986 PubMed Central PMC9161782
  • 2022 | Identification of cell types in multiplexed in situ images by combining protein expression and spatial information using CELESTA. Zhang, W, Li, I, Reticker-Flynn, NE, Good, Z, Chang, S, Samusik, N, Saumyaa, S, Li, Y, Zhou, X, Liang, R, Kong, CS, Le, QT, Gentles, AJ, Sunwoo, JB, Nolan, GP, Engleman, EG, Plevritis, SK Nat Methods 19 (6): 759-769. doi: 10.1038/s41592-022-01498-z. PubMed PMID:35654951
  • 2022 | Stromal changes in the aged lung induce an emergence from melanoma dormancy. Fane, ME, Chhabra, Y, Alicea, GM, Maranto, DA, Douglass, SM, Webster, MR, Rebecca, VW, Marino, GE, Almeida, F, Ecker, BL, Zabransky, DJ, Hüser, L, Beer, T, Tang, HY, Kossenkov, A, Herlyn, M, Speicher, DW, Xu, W, Xu, X, Jaffee, EM, Aguirre-Ghiso, JA, Weeraratna, AT Nature 606 (7913): 396-405. doi: 10.1038/s41586-022-04774-2. PubMed PMID:35650435
  • 2022 | Agent-based computational modeling of glioblastoma predicts that stromal density is central to oncolytic virus efficacy. Jenner, AL, Smalley, M, Goldman, D, Goins, WF, Cobbs, CS, Puchalski, RB, Chiocca, EA, Lawler, S, Macklin, P, Goldman, A, Craig, M iScience 25 (6): 104395. doi: 10.1016/j.isci.2022.104395. PubMed PMID:35637733 PubMed Central PMC9142563
  • 2022 | A PDE Model of Breast Tumor Progression in MMTV-PyMT Mice. Mohammad Mirzaei, N, Tatarova, Z, Hao, W, Changizi, N, Asadpoure, A, Zervantonakis, IK, Hu, Y, Chang, YH, Shahriyari, L J Pers Med 12 (5): . doi: 10.3390/jpm12050807. PubMed PMID:35629230 PubMed Central PMC9145520
  • 2022 | Redefining breast cancer subtypes to guide treatment prioritization and maximize response: Predictive biomarkers across 10 cancer therapies. Wolf, DM, Yau, C, Wulfkuhle, J, Brown-Swigart, L, Gallagher, RI, Lee, PRE, Zhu, Z, Magbanua, MJ, Sayaman, R, O'Grady, N, Basu, A, Delson, A, Coppé, JP, Lu, R, Braun, J, I-SPY2 Investigators, Asare, SM, Sit, L, Matthews, JB, Perlmutter, J, Hylton, N, Liu, MC, Pohlmann, P, Symmans, WF, Rugo, HS, Isaacs, C, DeMichele, AM, Yee, D, Berry, DA, Pusztai, L, Petricoin, EF, Hirst, GL, Esserman, LJ, van 't Veer, LJ Cancer Cell 40 (6): 609-623.e6. doi: 10.1016/j.ccell.2022.05.005. PubMed PMID:35623341
  • 2022 | A human breast atlas integrating single-cell proteomics and transcriptomics. Gray, GK, Li, CM, Rosenbluth, JM, Selfors, LM, Girnius, N, Lin, JR, Schackmann, RCJ, Goh, WL, Moore, K, Shapiro, HK, Mei, S, D'Andrea, K, Nathanson, KL, Sorger, PK, Santagata, S, Regev, A, Garber, JE, Dillon, DA, Brugge, JS Dev Cell 57 (11): 1400-1420.e7. doi: 10.1016/j.devcel.2022.05.003. PubMed PMID:35617956 PubMed Central PMC9202341
  • 2022 | Spatial structure impacts adaptive therapy by shaping intra-tumoral competition. Strobl, MAR, Gallaher, J, West, J, Robertson-Tessi, M, Maini, PK, Anderson, ARA Commun Med (Lond) 2 : 46. doi: 10.1038/s43856-022-00110-x. PubMed PMID:35603284 PubMed Central PMC9053239
  • 2022 | Cancer-Associated Fibroblasts and Squamous Epithelial Cells Constitute a Unique Microenvironment in a Mouse Model of Inflammation-Induced Colon Cancer. Vega, PN, Nilsson, A, Kumar, MP, Niitsu, H, Simmons, AJ, Ro, J, Wang, J, Chen, Z, Joughin, BA, Li, W, McKinley, ET, Liu, Q, Roland, JT, Washington, MK, Coffey, RJ, Lauffenburger, DA, Lau, KS Front Oncol 12 : 878920. doi: 10.3389/fonc.2022.878920. PubMed PMID:35600339 PubMed Central PMC9114773
  • 2022 | A conserved YAP/Notch/REST network controls the neuroendocrine cell fate in the lungs. Shue, YT, Drainas, AP, Li, NY, Pearsall, SM, Morgan, D, Sinnott-Armstrong, N, Hipkins, SQ, Coles, GL, Lim, JS, Oro, AE, Simpson, KL, Dive, C, Sage, J Nat Commun 13 (1): 2690. doi: 10.1038/s41467-022-30416-2. PubMed PMID:35577801 PubMed Central PMC9110333
  • 2022 | In Reply: TP53 Alteration Status and Tumor Mutational Burden Score: Prevalence and Prognosis in Head and Neck Squamous Cell Carcinoma. Burcher, KM, Wilson, HL, Gavrila, E, Abreu, A, D'Agostino, RB, Zhang, W, Porosnicu, M Oncologist 27 (7): e606-e607. doi: 10.1093/oncolo/oyac088. PubMed PMID:35552454 PubMed Central PMC9256026
  • 2022 | A framework for multiplex imaging optimization and reproducible analysis. Eng, J, Bucher, E, Hu, Z, Zheng, T, Gibbs, SL, Chin, K, Gray, JW Commun Biol 5 (1): 438. doi: 10.1038/s42003-022-03368-y. PubMed PMID:35545666 PubMed Central PMC9095647
  • 2022 | Single-cell monitoring of dry mass and dry mass density reveals exocytosis of cellular dry contents in mitosis. Miettinen, TP, Ly, KS, Lam, A, Manalis, SR Elife 11 : . doi: 10.7554/eLife.76664. PubMed PMID:35535854 PubMed Central PMC9090323
  • 2022 | Meningioma DNA methylation groups identify biological drivers and therapeutic vulnerabilities. Choudhury, A, Magill, ST, Eaton, CD, Prager, BC, Chen, WC, Cady, MA, Seo, K, Lucas, CG, Casey-Clyde, TJ, Vasudevan, HN, Liu, SJ, Villanueva-Meyer, JE, Lam, TC, Pu, JK, Li, LF, Leung, GK, Swaney, DL, Zhang, MY, Chan, JW, Qiu, Z, Martin, MV, Susko, MS, Braunstein, SE, Bush, NAO, Schulte, JD, Butowski, N, Sneed, PK, Berger, MS, Krogan, NJ, Perry, A, Phillips, JJ, Solomon, DA, Costello, JF, McDermott, MW, Rich, JN, Raleigh, DR Nat Genet 54 (5): 649-659. doi: 10.1038/s41588-022-01061-8. PubMed PMID:35534562
  • 2022 | Discovery of a dual WDR5 and Ikaros PROTAC degrader as an anti-cancer therapeutic. Li, D, Yu, X, Kottur, J, Gong, W, Zhang, Z, Storey, AJ, Tsai, YH, Uryu, H, Shen, Y, Byrum, SD, Edmondson, RD, Mackintosh, SG, Cai, L, Liu, Z, Aggarwal, AK, Tackett, AJ, Liu, J, Jin, J, Wang, GG Oncogene 41 (24): 3328-3340. doi: 10.1038/s41388-022-02340-8. PubMed PMID:35525905 PubMed Central PMC9189076
  • 2022 | An effective strategy for ligand-mediated pulldown of the HER2/HER3/NRG1β heterocomplex and cryo-EM structure determination at low sample concentrations. Trenker, R, Diwanji, D, Verba, KA, Jura, N Methods Enzymol 667 : 633-662. doi: 10.1016/bs.mie.2022.03.049. PubMed PMID:35525557 PubMed Central PMC9288110
  • 2022 | Efficient expression, purification, and visualization by cryo-EM of unliganded near full-length HER3. Diwanji, D, Trenker, R, Jura, N, Verba, KA Methods Enzymol 667 : 611-632. doi: 10.1016/bs.mie.2022.03.048. PubMed PMID:35525556 PubMed Central PMC9288109
  • 2022 | Lymph node colonization induces tumor-immune tolerance to promote distant metastasis. Reticker-Flynn, NE, Zhang, W, Belk, JA, Basto, PA, Escalante, NK, Pilarowski, GOW, Bejnood, A, Martins, MM, Kenkel, JA, Linde, IL, Bagchi, S, Yuan, R, Chang, S, Spitzer, MH, Carmi, Y, Cheng, J, Tolentino, LL, Choi, O, Wu, N, Kong, CS, Gentles, AJ, Sunwoo, JB, Satpathy, AT, Plevritis, SK, Engleman, EG Cell 185 (11): 1924-1942.e23. doi: 10.1016/j.cell.2022.04.019. PubMed PMID:35525247 PubMed Central PMC9149144
  • 2022 | Spatial dynamics of feedback and feedforward regulation in cell lineages. Uhl, P, Lowengrub, J, Komarova, N, Wodarz, D PLoS Comput Biol 18 (5): e1010039. doi: 10.1371/journal.pcbi.1010039. PubMed PMID:35522694 PubMed Central PMC9116666
  • 2022 | Molecular Characterization and Prospective Evaluation of Pathologic Response and Outcomes with Neoadjuvant Therapy in Metaplastic Triple-Negative Breast Cancer. Yam, C, Abuhadra, N, Sun, R, Adrada, BE, Ding, QQ, White, JB, Ravenberg, EE, Clayborn, AR, Valero, V, Tripathy, D, Damodaran, S, Arun, BK, Litton, JK, Ueno, NT, Murthy, RK, Lim, B, Baez, L, Li, X, Buzdar, AU, Hortobagyi, GN, Thompson, AM, Mittendorf, EA, Rauch, GM, Candelaria, RP, Huo, L, Moulder, SL, Chang, JT Clin Cancer Res 28 (13): 2878-2889. doi: 10.1158/1078-0432.CCR-21-3100. PubMed PMID:35507014 PubMed Central PMC9250637
  • 2022 | MTG16 regulates colonic epithelial differentiation, colitis, and tumorigenesis by repressing E protein transcription factors. Brown, RE, Jacobse, J, Anant, SA, Blunt, KM, Chen, B, Vega, PN, Jones, CT, Pilat, JM, Revetta, F, Gorby, AH, Stengel, KR, Choksi, YA, Palin, K, Piazuelo, MB, Washington, MK, Lau, KS, Goettel, JA, Hiebert, SW, Short, SP, Williams, CS JCI Insight 7 (10): . doi: 10.1172/jci.insight.153045. PubMed PMID:35503250 PubMed Central PMC9220854
  • 2022 | Overcoming differential tumor penetration of BRAF inhibitors using computationally guided combination therapy. Ng, TSC, Hu, H, Kronister, S, Lee, C, Li, R, Gerosa, L, Stopka, SA, Burgenske, DM, Khurana, I, Regan, MS, Vallabhaneni, S, Putta, N, Scott, E, Matvey, D, Giobbie-Hurder, A, Kohler, RH, Sarkaria, JN, Parangi, S, Sorger, PK, Agar, NYR, Jacene, HA, Sullivan, RJ, Buchbinder, E, Mikula, H, Weissleder, R, Miller, MA Sci Adv 8 (17): eabl6339. doi: 10.1126/sciadv.abl6339. PubMed PMID:35486732 PubMed Central PMC9054019
  • 2022 | Somatic whole genome dynamics of precancer in Barrett's esophagus reveals features associated with disease progression. Paulson, TG, Galipeau, PC, Oman, KM, Sanchez, CA, Kuhner, MK, Smith, LP, Hadi, K, Shah, M, Arora, K, Shelton, J, Johnson, M, Corvelo, A, Maley, CC, Yao, X, Sanghvi, R, Venturini, E, Emde, AK, Hubert, B, Imielinski, M, Robine, N, Reid, BJ, Li, X Nat Commun 13 (1): 2300. doi: 10.1038/s41467-022-29767-7. PubMed PMID:35484108 PubMed Central PMC9050715
  • 2022 | Dysregulated Ligand-receptor interactions from single cell transcriptomics. Liu, Q, Hsu, CY, Li, J, Shyr, Y Bioinformatics : . doi: 10.1093/bioinformatics/btac294. PubMed PMID:35482476 PubMed Central PMC9191214
  • 2022 | Circadian activities of the brain MNK-eIF4E signalling axis contribute to diurnal rhythms of some cognitive functions. Liu, D, Li, J, Lin, H, Lorsung, E, Le, N, Singla, R, Mishra, A, Fukunaga, R, Cao, R Eur J Neurosci 56 (1): 3553-3569. doi: 10.1111/ejn.15678. PubMed PMID:35481869
  • 2022 | High inter-follicular spatial co-localization of CD8+FOXP3+ with CD4+CD8+ cells predicts favorable outcome in follicular lymphoma. Hagos, YB, Akarca, AU, Ramsay, A, Rossi, RL, Pomplun, S, Ngai, V, Moioli, A, Gianatti, A, Mcnamara, C, Rambaldi, A, Quezada, SA, Linch, D, Gritti, G, Yuan, Y, Marafioti, T Hematol Oncol : . doi: 10.1002/hon.3003. PubMed PMID:35451108
  • 2022 | A Whole-Genome CRISPR Screen Identifies AHR Loss as a Mechanism of Resistance to a PARP7 Inhibitor. Chen, H, Diolaiti, ME, O'Leary, PC, Rojc, A, Krogan, NJ, Kim, M, Ashworth, A Mol Cancer Ther 21 (7): 1076-1089. doi: 10.1158/1535-7163.MCT-21-0841. PubMed PMID:35439318
  • 2022 | Aspirin's effect on kinetic parameters of cells contributes to its role in reducing incidence of advanced colorectal adenomas, shown by a multiscale computational study. Wang, Y, Boland, CR, Goel, A, Wodarz, D, Komarova, NL Elife 11 : . doi: 10.7554/eLife.71953. PubMed PMID:35416770 PubMed Central PMC9007589
  • 2022 | Lineage tracing in human tissues. Gabbutt, C, Wright, NA, Baker, AM, Shibata, D, Graham, TA J Pathol 257 (4): 501-512. doi: 10.1002/path.5911. PubMed PMID:35415852 PubMed Central PMC9253082
  • 2022 | Cytotoxic granzyme C-expressing ILC1s contribute to antitumor immunity and neonatal autoimmunity. Nixon, BG, Chou, C, Krishna, C, Dadi, S, Michel, AO, Cornish, AE, Kansler, ER, Do, MH, Wang, X, Capistrano, KJ, Rudensky, AY, Leslie, CS, Li, MO Sci Immunol 7 (70): eabi8642. doi: 10.1126/sciimmunol.abi8642. PubMed PMID:35394814 PubMed Central PMC9233921
  • 2022 | Phosphorylated MED1 links transcription recycling and cancer growth. Chen, Z, Ye, Z, Soccio, RE, Nakadai, T, Hankey, W, Zhao, Y, Huang, F, Yuan, F, Wang, H, Cui, Z, Sunkel, B, Wu, D, Dzeng, RK, Thomas-Ahner, JM, Huang, THM, Clinton, SK, Huang, J, Lazar, MA, Jin, VX, Roeder, RG, Wang, Q Nucleic Acids Res 50 (8): 4450-4463. doi: 10.1093/nar/gkac246. PubMed PMID:35394046 PubMed Central PMC9071494
  • 2022 | Structure-based design of CDC42 effector interaction inhibitors for the treatment of cancer. Jahid, S, Ortega, JA, Vuong, LM, Acquistapace, IM, Hachey, SJ, Flesher, JL, La Serra, MA, Brindani, N, La Sala, G, Manigrasso, J, Arencibia, JM, Bertozzi, SM, Summa, M, Bertorelli, R, Armirotti, A, Jin, R, Liu, Z, Chen, CF, Edwards, R, Hughes, CCW, De Vivo, M, Ganesan, AK Cell Rep 39 (1): 110641. doi: 10.1016/j.celrep.2022.110641. PubMed PMID:35385746 PubMed Central PMC9127750
  • 2022 | Deadenylase-dependent mRNA decay of GDF15 and FGF21 orchestrates food intake and energy expenditure. Katsumura, S, Siddiqui, N, Goldsmith, MR, Cheah, JH, Fujikawa, T, Minegishi, G, Yamagata, A, Yabuki, Y, Kobayashi, K, Shirouzu, M, Inagaki, T, Huang, TH, Musi, N, Topisirovic, I, Larsson, O, Morita, M Cell Metab 34 (4): 564-580.e8. doi: 10.1016/j.cmet.2022.03.005. PubMed PMID:35385705
  • 2022 | Cell type determination for cardiac differentiation occurs soon after seeding of human-induced pluripotent stem cells. Jiang, CL, Goyal, Y, Jain, N, Wang, Q, Truitt, RE, Coté, AJ, Emert, B, Mellis, IA, Kiani, K, Yang, W, Jain, R, Raj, A Genome Biol 23 (1): 90. doi: 10.1186/s13059-022-02654-6. PubMed PMID:35382863 PubMed Central PMC8985385
  • 2022 | T-cell Dysfunction upon Expression of MYC with Altered Phosphorylation at Threonine 58 and Serine 62. Daniel, CJ, Pelz, C, Wang, X, Munks, MW, Ko, A, Murugan, D, Byers, SA, Juarez, E, Taylor, KL, Fan, G, Coussens, LM, Link, JM, Sears, RC Mol Cancer Res 20 (7): 1151-1165. doi: 10.1158/1541-7786.MCR-21-0560. PubMed PMID:35380701 PubMed Central PMC9262837
  • 2022 | Immunosuppressive niche engineering at the onset of human colorectal cancer. Gatenbee, CD, Baker, AM, Schenck, RO, Strobl, M, West, J, Neves, MP, Hasan, SY, Lakatos, E, Martinez, P, Cross, WCH, Jansen, M, Rodriguez-Justo, M, Whelan, CJ, Sottoriva, A, Leedham, S, Robertson-Tessi, M, Graham, TA, Anderson, ARA Nat Commun 13 (1): 1798. doi: 10.1038/s41467-022-29027-8. PubMed PMID:35379804 PubMed Central PMC8979971
  • 2022 | High-Dimensional Analysis Reveals Distinct Endotypes in Patients With Idiopathic Inflammatory Myopathies. Wilfong, EM, Bartkowiak, T, Vowell, KN, Westlake, CS, Irish, JM, Kendall, PL, Crofford, LJ, Bonami, RH Front Immunol 13 : 756018. doi: 10.3389/fimmu.2022.756018. PubMed PMID:35371068 PubMed Central PMC8964392
  • 2021 | Dynamic High-Pass Filtering and Multi-Spectral Attention for Image Super-Resolution. Magid, SA, Zhang, Y, Wei, D, Jang, WD, Lin, Z, Fu, Y, Pfister, H Proc IEEE Int Conf Comput Vis 2021 : 4268-4277. doi: 10.1109/iccv48922.2021.00425. PubMed PMID:35368831 PubMed Central PMC8969883
  • 2021 | A Tale of Two Histologies: Dissecting the Biology of Lineage Transformation in Lung Cancer. Meador, CB, Lovly, CM Cancer Discov 11 (12): 2962-2964. doi: 10.1158/2159-8290.CD-21-1222. PubMed PMID:35363868 PubMed Central PMC8988434
  • 2022 | Collateral responses to classical cytotoxic chemotherapies are heterogeneous and sensitivities are sparse. Dalin, S, Grauman-Boss, B, Lauffenburger, DA, Hemann, MT Sci Rep 12 (1): 5453. doi: 10.1038/s41598-022-09319-1. PubMed PMID:35361803 PubMed Central PMC8971507
  • 2022 | Dual data and motif clustering improves the modeling and interpretation of phosphoproteomic data. Creixell, M, Meyer, AS Cell Rep Methods 2 (2): . doi: 10.1016/j.crmeth.2022.100167. PubMed PMID:35360705 PubMed Central PMC8967184
  • 2021 | Forecasting cancer: from precision to predictive medicine. Fertig, EJ, Jaffee, EM, Macklin, P, Stearns, V, Wang, C Med (N Y) 2 (9): 1004-1010. doi: 10.1016/j.medj.2021.08.007. PubMed PMID:35330848 PubMed Central PMC8942083
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